SNP Profiles matching TSA 654

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_Input profile	TT	CC	CC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CC
1._TSA_656	_	_	AC	GG	CT	_	CC	CC	AA	CT	_	_	AA	_
2._TSA_656	_	_	AC	GG	CT	_	CC	CC	AA	CT	_	_	AA	_
3._TSA_656	_	_	AC	GG	CT	_	CC	CC	AA	CT	_	_	AA	_
4._TSA_656	_	_	AC	GG	CT	_	CC	CC	AA	CT	_	_	AA	_
5._TSA_656	_	_	AC	GG	CT	_	CC	CC	AA	CT	_	_	AA	_
6._GC-08-257-8-25	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
7._GC-08-257-8-25	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
8._GC-08-257-8-25	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
9._GC-08-257-8-25	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
10._GC-08-257-8-25	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
11._RUQ_1016	TT	CC	CC	GG	TT	GG	CC	CC	AA	CT	AA	GG	AA	CC
12._GC-01-038-2-15	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	AA	GG	AA	CG
13._GC-01-038-2-15	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	AA	GG	AA	CG
14._GC-01-038-2-15	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	AA	GG	AA	CG
15._GC-01-038-2-15	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	AA	GG	AA	CG
16._GC-01-038-2-15	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	AA	GG	AA	CG
17._GC-01-038-2-15	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	AA	GG	AA	CG
18._RUQ_827	TT	CC	CC	GG	CT	GG	AC	CC	AG	TT	AA	GG	AA	CC
19._GC-01-038-2-15	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	_	GG	AA	CG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
1._TSA_656	AG	AA	CC	GT	GG	CC	_	CT	_	GG	_	_	_	CC
2._TSA_656	AG	AA	CC	GT	GG	CC	_	CT	_	GG	_	_	_	CC
3._TSA_656	AG	AA	CC	GT	GG	CC	_	CT	_	GG	_	_	_	CC
4._TSA_656	AG	AA	CC	GT	GG	CC	_	CT	_	GG	_	_	_	CC
5._TSA_656	AG	AA	CC	GT	GG	CC	_	CT	_	GG	_	_	_	CC
6._GC-08-257-8-25	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
7._GC-08-257-8-25	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
8._GC-08-257-8-25	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
9._GC-08-257-8-25	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
10._GC-08-257-8-25	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
11._RUQ_1016	AG	AA	CC	GG	GG	CC	CC	CT	TT	GG	AG	TT	CC	CC
12._GC-01-038-2-15	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
13._GC-01-038-2-15	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
14._GC-01-038-2-15	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
15._GC-01-038-2-15	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
16._GC-01-038-2-15	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
17._GC-01-038-2-15	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
18._RUQ_827	AG	AC	CC	GT	GG	AC	CC	CT	CT	GG	GG	TT	CC	CC
19._GC-01-038-2-15	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	TT	AA	CC	CC	GG	GG	TT	GT	CT	CC	CT	CG	AG
1._TSA_656	_	TT	AA	_	CC	_	_	_	GT	_	_	CT	CG	AG
2._TSA_656	_	TT	AA	_	CC	_	_	_	GT	_	_	CT	CG	AG
3._TSA_656	_	TT	AA	_	CC	_	_	_	GT	_	_	CT	CG	AG
4._TSA_656	_	TT	AA	_	CC	_	_	_	GT	_	_	CT	CG	AG
5._TSA_656	_	TT	AA	_	CC	_	_	_	GT	_	_	CT	CG	AG
6._GC-08-257-8-25	CG	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	AG
7._GC-08-257-8-25	CG	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	AG
8._GC-08-257-8-25	CG	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	AG
9._GC-08-257-8-25	CG	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	AG
10._GC-08-257-8-25	CG	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	AG
11._RUQ_1016	CG	TT	AA	CC	CC	GG	GG	TT	GT	CT	CC	TT	CG	AA
12._GC-01-038-2-15	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG
13._GC-01-038-2-15	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG
14._GC-01-038-2-15	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG
15._GC-01-038-2-15	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG
16._GC-01-038-2-15	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG
17._GC-01-038-2-15	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG
18._RUQ_827	CG	TT	AA	CC	CC	GG	GG	TT	GG	CT	CC	CT	GG	AG
19._GC-01-038-2-15	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG

Input profile: TSA_654 RUQ_1029

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._TSA_656

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8825 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._TSA_656

97.9 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 2

Dapeng Zhang, 2016

3._TSA_656

97.9 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 3

Dapeng Zhang, 2016

4._TSA_656

97.9 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 6

Dapeng Zhang, 2016

5._TSA_656

97.9 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 10

Dapeng Zhang, 2016

6._TSA_656 GC-08-257-8-25

96.4 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._TSA_656 GC-08-257-8-25

96.4 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._TSA_656 GC-08-257-8-25

96.4 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._TSA_656 GC-08-257-8-25

96.4 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._TSA_656 GC-08-257-8-25

96.4 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

11._TSA_656 RUQ_1016

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

12._GM_33 GC-01-038-2-15

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

13._GM_33 GC-01-038-2-15

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._GM_33 GC-01-038-2-15

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

15._GM_33 GC-01-038-2-15

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP3

16._GM_33 GC-01-038-2-15

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

17._GM_33 GC-01-038-2-15

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

18._ICS_10 RUQ_827

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._GM_33 GC-01-038-2-15

90.2 %
41 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484